q2-SCNIC: A tool for making correlation networks, finding …
Sep 20, 2018 · q2-SCNIC: Community Tutorial SCNIC (Sparse Cooccurnce Network Investigation for Compositional data) is a tool for building correlation networks from feature tables, finding …
PhD Opportunity - Soil Microbial Ecology - QIIME 2 Forum
Mar 23, 2023 · UTSA is a public research university and a Hispanic-Serving Institution located in scenic San Antonio, Texas. The main campus, where the graduate position will be housed, …
how to reference the plugins used - QIIME 2 Forum
Jan 8, 2022 · I wanted to ask if anyone can help me to know how to cite the qiime plugins (permanova, shannon, observed features, evenness, faith phylogenetic tree, braycurtis, scenic …
qiime2R installation issue - Library Support - QIIME 2 Forum
Feb 13, 2020 · I have a problem with the installation of package. Namely, when I try to install it using "devtools::install_github ("jbisanz/qiime2R" I get the following error:
Importing bins/mags into Qiime2 - Technical Support - QIIME 2 …
Mar 31, 2025 · Dear devs, dear users I am processing metagenome dataset. I currently follow the q2-moshpit: A set of tutorials showcasing shotgun metagenomics analysis workflows, but I …
taxonomy mitochondria vs D_4__Mitochondria - General …
Apr 21, 2025 · Hi everyone, I have just finished going through my qiime2 analysis following the moving pictures and fecal sample tutorial (for merging). I have created my phyloseq object …
PERMANOVA results significant, but differential abundance results ...
Oct 19, 2025 · Hello, I am performing a study about differences in microbial communities between two sample types in an Antarctic ecosystem. According to PERMANOVA, there are significant …
Observed ASV richness drops after adding 3rd MiSeq library — …
Oct 16, 2025 · Basubi: I merged library A + B → richness stays ~350 (fungi) / ~300 (bacteria). But when I merge library C with A+B the observed ASV richness drops for both kingdoms (I lose …
NCBI: How to link BioSample to BankIt submission?
Mar 28, 2025 · I created a BioProject with 20 BioSamples. I use the NCBI BankIt submission tool and want to associate a sequence with the BioSamples. But there is no field where I can enter …
How to merge rep-seqs from 3 runs after dada2?
Sep 11, 2017 · Hello, I have three Illumina Miseq sequencing runs with different samples in each for the same project. I imported and processed them separately in QIIME2 through the dada2 …